Add batch 1
Browse files- 5zjy/5zjy_af2_apo_protein.pdb +0 -0
- 5zjy/5zjy_af2_holo_ligand.sdf +241 -0
- 5zjy/5zjy_af2_holo_protein.pdb +0 -0
- 5zjz/5zjz_af2_apo_protein.pdb +0 -0
- 5zjz/5zjz_af2_holo_ligand.sdf +271 -0
- 5zjz/5zjz_af2_holo_protein.pdb +0 -0
- 5zk5/5zk5_af2_apo_protein.pdb +0 -0
- 5zk5/5zk5_af2_holo_ligand.sdf +246 -0
- 5zk5/5zk5_af2_holo_protein.pdb +0 -0
- 5zk7/5zk7_af2_apo_protein.pdb +0 -0
- 5zk7/5zk7_af2_holo_ligand.sdf +92 -0
- 5zk7/5zk7_af2_holo_protein.pdb +0 -0
- 5zk9/5zk9_af2_apo_protein.pdb +0 -0
- 5zk9/5zk9_af2_holo_ligand.sdf +248 -0
- 5zk9/5zk9_af2_holo_protein.pdb +0 -0
- 5zlf/5zlf_af2_apo_protein.pdb +0 -0
- 5zlf/5zlf_af2_holo_ligand.sdf +69 -0
- 5zlf/5zlf_af2_holo_protein.pdb +0 -0
- 5zml/5zml_af2_apo_protein.pdb +0 -0
- 5zml/5zml_af2_holo_ligand.sdf +273 -0
- 5zml/5zml_af2_holo_protein.pdb +0 -0
- 5zr3/5zr3_af2_apo_protein.pdb +0 -0
- 5zr3/5zr3_af2_holo_ligand.sdf +76 -0
- 5zr3/5zr3_af2_holo_protein.pdb +0 -0
- 5zxk/5zxk_af2_apo_protein.pdb +0 -0
- 5zxk/5zxk_af2_holo_ligand.sdf +35 -0
- 5zxk/5zxk_af2_holo_protein.pdb +0 -0
- 6a1c/6a1c_af2_apo_protein.pdb +0 -0
- 6a1c/6a1c_af2_holo_ligand.sdf +58 -0
- 6a1c/6a1c_af2_holo_protein.pdb +0 -0
5zjy/5zjy_af2_apo_protein.pdb
ADDED
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5zjy/5zjy_af2_holo_ligand.sdf
ADDED
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| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
116118 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-2.7530 11.3973 16.3134 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
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| 7 |
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-2.0027 13.5841 15.9577 O 0 0 0 0 0 0 0 0 0 0 0 0
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 32 |
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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| 41 |
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| 42 |
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| 43 |
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| 44 |
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| 45 |
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| 46 |
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| 47 |
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| 48 |
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| 49 |
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| 50 |
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| 51 |
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| 52 |
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| 53 |
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| 54 |
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| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 61 |
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| 62 |
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| 63 |
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| 64 |
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| 65 |
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| 66 |
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| 67 |
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| 68 |
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| 69 |
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| 70 |
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| 71 |
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| 72 |
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| 73 |
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| 74 |
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| 75 |
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| 76 |
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| 77 |
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| 78 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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| 83 |
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| 84 |
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| 85 |
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| 86 |
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| 87 |
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| 88 |
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| 89 |
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| 90 |
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| 91 |
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| 92 |
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| 93 |
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| 94 |
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| 95 |
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| 96 |
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| 97 |
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| 98 |
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| 99 |
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| 100 |
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| 101 |
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| 102 |
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| 103 |
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| 104 |
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| 105 |
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| 106 |
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| 107 |
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| 108 |
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| 109 |
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| 110 |
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| 111 |
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| 112 |
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| 113 |
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| 114 |
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| 115 |
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| 116 |
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| 117 |
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| 118 |
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| 119 |
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| 120 |
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| 121 |
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2 3 2 0
|
| 122 |
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2 1 1 0
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| 123 |
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4 2 1 0
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| 124 |
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| 125 |
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| 128 |
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+
28 29 2 0
|
| 153 |
+
34 33 1 0
|
| 154 |
+
43 34 1 0
|
| 155 |
+
34 35 1 0
|
| 156 |
+
43 44 2 0
|
| 157 |
+
45 43 1 0
|
| 158 |
+
35 36 1 0
|
| 159 |
+
36 37 2 0
|
| 160 |
+
36 42 1 0
|
| 161 |
+
37 38 1 0
|
| 162 |
+
42 41 2 0
|
| 163 |
+
38 39 2 0
|
| 164 |
+
41 39 1 0
|
| 165 |
+
39 40 1 0
|
| 166 |
+
46 45 1 0
|
| 167 |
+
49 46 1 0
|
| 168 |
+
46 47 1 0
|
| 169 |
+
49 50 2 0
|
| 170 |
+
51 49 1 0
|
| 171 |
+
47 48 1 0
|
| 172 |
+
52 51 1 0
|
| 173 |
+
60 52 1 0
|
| 174 |
+
52 53 1 0
|
| 175 |
+
60 61 2 0
|
| 176 |
+
62 60 1 0
|
| 177 |
+
53 54 1 0
|
| 178 |
+
54 55 1 0
|
| 179 |
+
55 56 1 0
|
| 180 |
+
56 57 1 0
|
| 181 |
+
57 58 2 0
|
| 182 |
+
57 59 1 0
|
| 183 |
+
115116 2 0
|
| 184 |
+
115 63 1 0
|
| 185 |
+
114115 1 0
|
| 186 |
+
63 64 1 0
|
| 187 |
+
63 62 1 0
|
| 188 |
+
63 65 1 0
|
| 189 |
+
65 66 1 0
|
| 190 |
+
66 67 1 0
|
| 191 |
+
67 68 1 0
|
| 192 |
+
68 69 2 0
|
| 193 |
+
108114 1 0
|
| 194 |
+
106108 1 0
|
| 195 |
+
108109 1 0
|
| 196 |
+
106107 2 0
|
| 197 |
+
105106 1 0
|
| 198 |
+
109110 1 0
|
| 199 |
+
110111 1 0
|
| 200 |
+
111113 2 0
|
| 201 |
+
111112 1 0
|
| 202 |
+
100105 1 0
|
| 203 |
+
98100 1 0
|
| 204 |
+
100101 1 0
|
| 205 |
+
98 99 2 0
|
| 206 |
+
97 98 1 0
|
| 207 |
+
101102 1 0
|
| 208 |
+
102103 1 0
|
| 209 |
+
102104 1 0
|
| 210 |
+
92 97 1 0
|
| 211 |
+
90 92 1 0
|
| 212 |
+
92 93 1 0
|
| 213 |
+
90 91 2 0
|
| 214 |
+
89 90 1 0
|
| 215 |
+
93 94 1 0
|
| 216 |
+
94 95 1 0
|
| 217 |
+
94 96 1 0
|
| 218 |
+
75 76 2 0
|
| 219 |
+
73 75 1 0
|
| 220 |
+
75 77 1 0
|
| 221 |
+
73 74 1 0
|
| 222 |
+
73 89 1 0
|
| 223 |
+
73 72 1 0
|
| 224 |
+
72 71 1 0
|
| 225 |
+
71 70 1 0
|
| 226 |
+
70 69 1 0
|
| 227 |
+
77 78 1 0
|
| 228 |
+
78 86 1 0
|
| 229 |
+
78 79 1 0
|
| 230 |
+
86 88 2 0
|
| 231 |
+
86 87 1 0
|
| 232 |
+
79 80 1 0
|
| 233 |
+
80 81 2 0
|
| 234 |
+
80 85 1 0
|
| 235 |
+
81 82 1 0
|
| 236 |
+
85 84 2 0
|
| 237 |
+
82 83 2 0
|
| 238 |
+
84 83 1 0
|
| 239 |
+
M CHG 2 10 1 19 1
|
| 240 |
+
M END
|
| 241 |
+
$$$$
|
5zjy/5zjy_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zjz/5zjz_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zjz/5zjz_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,271 @@
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
130134 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-3.5401 12.6598 15.1368 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-3.3875 13.9493 14.3481 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-2.4459 14.0649 13.5805 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-4.2461 14.9724 14.4861 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-5.3582 15.0243 15.4244 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-5.6447 16.4756 15.8983 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-6.4322 17.4126 14.9773 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-5.5902 17.9691 13.8378 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-6.2305 19.1763 13.1741 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-5.4092 19.6290 12.0182 N 0 0 0 0 0 4 0 0 0 0 0 0
|
| 15 |
+
-6.6224 14.3071 14.9284 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-7.2572 13.6061 15.7135 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-6.9721 14.4345 13.6426 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-8.2001 13.8041 13.1308 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-8.7706 14.5670 11.9253 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
-9.1811 16.0069 12.2104 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
-10.3886 16.0967 13.1373 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
-10.5030 17.4690 13.7819 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
-11.4408 17.4394 14.9400 N 0 0 0 0 0 4 0 0 0 0 0 0
|
| 24 |
+
-8.0007 12.3304 12.7806 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
-7.4715 11.9990 11.7172 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
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-8.4230 11.4581 13.6945 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
-8.4472 10.0185 13.4707 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 28 |
+
-7.5064 9.2932 14.4322 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
-6.0385 9.6885 14.3102 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
-5.2488 9.3046 15.5604 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
-5.0907 7.8537 15.7061 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
-4.7590 7.2096 16.8324 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
-4.6424 5.8781 16.8163 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
-4.5578 7.8649 17.9792 N 0 0 0 0 0 4 0 0 0 0 0 0
|
| 35 |
+
-9.8781 9.5239 13.6504 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 36 |
+
-10.5680 9.9324 14.5875 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 37 |
+
-10.3183 8.6584 12.7428 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 38 |
+
-11.6322 8.0367 12.8173 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 39 |
+
-12.5141 8.4758 11.6352 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 40 |
+
-12.7742 9.9615 11.5966 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 41 |
+
-13.8338 10.5232 12.3157 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 42 |
+
-14.0789 11.8883 12.2844 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 43 |
+
-13.2581 12.7166 11.5423 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 44 |
+
-13.4978 14.0778 11.5104 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 45 |
+
-12.1919 12.1844 10.8312 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 46 |
+
-11.9595 10.8165 10.8576 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 47 |
+
-11.4951 6.5265 12.8042 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 48 |
+
-10.7500 5.9668 11.9793 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 49 |
+
-12.2257 5.8628 13.6991 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 50 |
+
-12.3555 4.4086 13.6489 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 51 |
+
-13.0351 3.8702 14.9098 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 52 |
+
-14.3909 4.2924 14.9707 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 53 |
+
-13.1787 4.0069 12.4313 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 54 |
+
-13.9361 4.8160 11.8828 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 55 |
+
-13.0305 2.7495 12.0361 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 56 |
+
-13.8690 2.1203 11.0153 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 57 |
+
-13.5599 0.6276 10.9557 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 58 |
+
-14.3086 -0.1211 9.8829 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 59 |
+
-13.9110 -1.5786 9.8791 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 60 |
+
-14.7315 -2.3216 8.9366 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 61 |
+
-15.9554 -2.7906 9.1772 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 62 |
+
-16.5592 -2.6112 10.3507 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 63 |
+
-16.5927 -3.4487 8.2172 N 0 0 0 0 0 4 0 0 0 0 0 0
|
| 64 |
+
-15.3674 2.3133 11.2782 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 65 |
+
-16.1113 2.6848 10.3695 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 66 |
+
-15.7643 2.0225 12.5283 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 67 |
+
-17.1345 2.1341 13.0396 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 68 |
+
-17.9785 1.0466 12.3522 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 69 |
+
-17.1628 1.8946 14.5579 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 70 |
+
-18.5365 2.0678 15.2367 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 71 |
+
-18.9202 3.4837 15.6751 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 72 |
+
-20.3313 3.4623 16.2365 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 73 |
+
-21.3505 4.2239 15.8303 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 74 |
+
-21.2755 5.2726 14.7390 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 75 |
+
-21.6942 4.7241 13.3745 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 76 |
+
-21.7113 5.8551 12.3291 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 77 |
+
-21.9995 5.4150 10.8840 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 78 |
+
-23.2348 4.5076 10.8713 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 79 |
+
-22.2898 6.6948 10.1043 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 80 |
+
-23.4561 7.0082 9.8561 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 81 |
+
-21.2911 7.4097 9.7507 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 82 |
+
-21.4349 8.6786 9.0110 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 83 |
+
-20.0941 9.4396 9.0205 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 84 |
+
-19.7058 10.0384 10.3619 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 85 |
+
-20.6561 10.5902 11.2360 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 86 |
+
-20.2689 11.1520 12.4509 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 87 |
+
-18.9286 11.1859 12.8006 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 88 |
+
-17.9748 10.6697 11.9362 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 89 |
+
-18.3629 10.1074 10.7269 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 90 |
+
-21.9294 8.5462 7.5627 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 91 |
+
-22.3341 9.5471 6.9712 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 92 |
+
-21.8825 7.3375 7.0076 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 93 |
+
-22.4543 7.0017 5.6971 C 0 0 1 0 0 0 0 0 0 0 0 0
|
| 94 |
+
-22.1026 5.5439 5.3499 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 95 |
+
-22.1965 5.1185 3.9042 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 96 |
+
-22.6767 5.8389 2.8547 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 97 |
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-22.6071 5.1015 1.6983 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 98 |
+
-22.0733 3.8722 1.9835 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 99 |
+
-21.8054 2.7810 1.1427 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 100 |
+
-21.2579 1.6561 1.7143 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 101 |
+
-20.9834 1.5923 3.0987 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 102 |
+
-21.2584 2.6755 3.9344 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 103 |
+
-21.8115 3.8417 3.3712 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 104 |
+
-23.9715 7.1749 5.7458 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 105 |
+
-24.6203 6.8782 6.9832 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 106 |
+
-24.5905 7.5775 4.7688 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 107 |
+
-20.8522 4.7287 10.2699 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 108 |
+
-20.8117 4.3201 8.9890 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 109 |
+
-21.7470 4.4815 8.2048 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 110 |
+
-19.5128 3.6775 8.4832 C 0 0 2 0 0 0 0 0 0 0 0 0
|
| 111 |
+
-19.4746 2.1728 8.7718 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 112 |
+
-18.3669 1.3973 8.0491 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 113 |
+
-18.3585 -0.0565 8.5048 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 114 |
+
-18.5094 1.4658 6.5302 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 115 |
+
-18.3186 4.3442 9.0049 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 116 |
+
-18.0199 5.5980 8.6685 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 117 |
+
-18.7338 6.2749 7.9258 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 118 |
+
-16.7573 6.1984 9.2758 C 0 0 2 0 0 0 0 0 0 0 0 0
|
| 119 |
+
-15.4986 5.7712 8.4962 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 120 |
+
-14.2251 6.5406 8.8702 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 121 |
+
-13.0082 5.8830 8.2331 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 122 |
+
-14.3182 8.0031 8.4539 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 123 |
+
-16.6254 5.8735 10.7057 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 124 |
+
-17.5389 6.2917 11.5798 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 125 |
+
-18.5228 6.9560 11.2575 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 126 |
+
-17.3037 5.9163 13.0406 C 0 0 2 0 0 0 0 0 0 0 0 0
|
| 127 |
+
-16.1446 6.7581 13.5687 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 128 |
+
-16.1278 6.9981 15.0635 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 129 |
+
-15.0148 7.9585 15.4577 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 130 |
+
-15.3913 9.1555 15.8868 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 131 |
+
-13.8265 7.6284 15.3607 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 132 |
+
-16.9562 4.5028 13.1993 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 133 |
+
-17.6561 3.5335 12.7632 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 134 |
+
-18.7114 3.6813 12.1683 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 135 |
+
2 3 2 0
|
| 136 |
+
2 1 1 0
|
| 137 |
+
4 2 1 0
|
| 138 |
+
5 4 1 0
|
| 139 |
+
11 5 1 0
|
| 140 |
+
5 6 1 6
|
| 141 |
+
11 12 2 0
|
| 142 |
+
13 11 1 0
|
| 143 |
+
6 7 1 0
|
| 144 |
+
7 8 1 0
|
| 145 |
+
8 9 1 0
|
| 146 |
+
9 10 1 0
|
| 147 |
+
14 13 1 0
|
| 148 |
+
20 14 1 0
|
| 149 |
+
14 15 1 6
|
| 150 |
+
20 21 2 0
|
| 151 |
+
22 20 1 0
|
| 152 |
+
15 16 1 0
|
| 153 |
+
16 17 1 0
|
| 154 |
+
17 18 1 0
|
| 155 |
+
18 19 1 0
|
| 156 |
+
23 22 1 0
|
| 157 |
+
31 23 1 0
|
| 158 |
+
23 24 1 1
|
| 159 |
+
31 32 2 0
|
| 160 |
+
33 31 1 0
|
| 161 |
+
24 25 1 0
|
| 162 |
+
25 26 1 0
|
| 163 |
+
26 27 1 0
|
| 164 |
+
27 28 1 0
|
| 165 |
+
28 30 2 0
|
| 166 |
+
28 29 1 0
|
| 167 |
+
34 33 1 0
|
| 168 |
+
43 34 1 0
|
| 169 |
+
34 35 1 6
|
| 170 |
+
43 44 2 0
|
| 171 |
+
45 43 1 0
|
| 172 |
+
35 36 1 0
|
| 173 |
+
36 37 2 0
|
| 174 |
+
36 42 1 0
|
| 175 |
+
37 38 1 0
|
| 176 |
+
42 41 2 0
|
| 177 |
+
38 39 2 0
|
| 178 |
+
41 39 1 0
|
| 179 |
+
39 40 1 0
|
| 180 |
+
46 45 1 0
|
| 181 |
+
49 46 1 0
|
| 182 |
+
46 47 1 1
|
| 183 |
+
49 50 2 0
|
| 184 |
+
51 49 1 0
|
| 185 |
+
47 48 1 0
|
| 186 |
+
52 51 1 0
|
| 187 |
+
60 52 1 0
|
| 188 |
+
52 53 1 1
|
| 189 |
+
60 61 2 0
|
| 190 |
+
62 60 1 0
|
| 191 |
+
53 54 1 0
|
| 192 |
+
54 55 1 0
|
| 193 |
+
55 56 1 0
|
| 194 |
+
56 57 1 0
|
| 195 |
+
57 59 2 0
|
| 196 |
+
57 58 1 0
|
| 197 |
+
129130 2 0
|
| 198 |
+
129 63 1 0
|
| 199 |
+
128129 1 0
|
| 200 |
+
63 62 1 0
|
| 201 |
+
63 65 1 0
|
| 202 |
+
63 64 1 6
|
| 203 |
+
65 66 1 0
|
| 204 |
+
67 68 1 0
|
| 205 |
+
66 67 1 0
|
| 206 |
+
68 69 2 0
|
| 207 |
+
122128 1 0
|
| 208 |
+
120122 1 0
|
| 209 |
+
122123 1 6
|
| 210 |
+
120121 2 0
|
| 211 |
+
119120 1 0
|
| 212 |
+
123124 1 0
|
| 213 |
+
124125 1 0
|
| 214 |
+
125127 2 0
|
| 215 |
+
125126 1 0
|
| 216 |
+
114119 1 0
|
| 217 |
+
112114 1 0
|
| 218 |
+
114115 1 6
|
| 219 |
+
112113 2 0
|
| 220 |
+
111112 1 0
|
| 221 |
+
115116 1 0
|
| 222 |
+
116117 1 0
|
| 223 |
+
116118 1 0
|
| 224 |
+
106111 1 0
|
| 225 |
+
104106 1 0
|
| 226 |
+
106107 1 1
|
| 227 |
+
104105 2 0
|
| 228 |
+
103104 1 0
|
| 229 |
+
107108 1 0
|
| 230 |
+
108109 1 0
|
| 231 |
+
108110 1 0
|
| 232 |
+
75 76 2 0
|
| 233 |
+
73 75 1 0
|
| 234 |
+
75 77 1 0
|
| 235 |
+
103 73 1 0
|
| 236 |
+
73 72 1 0
|
| 237 |
+
73 74 1 1
|
| 238 |
+
72 71 1 0
|
| 239 |
+
69 70 1 0
|
| 240 |
+
70 71 1 0
|
| 241 |
+
77 78 1 0
|
| 242 |
+
78 86 1 0
|
| 243 |
+
78 79 1 6
|
| 244 |
+
86 87 2 0
|
| 245 |
+
86 88 1 0
|
| 246 |
+
79 80 1 0
|
| 247 |
+
80 81 2 0
|
| 248 |
+
80 85 1 0
|
| 249 |
+
81 82 1 0
|
| 250 |
+
85 84 2 0
|
| 251 |
+
82 83 2 0
|
| 252 |
+
84 83 1 0
|
| 253 |
+
88 89 1 0
|
| 254 |
+
89100 1 0
|
| 255 |
+
89 90 1 1
|
| 256 |
+
100102 2 0
|
| 257 |
+
100101 1 0
|
| 258 |
+
90 91 1 0
|
| 259 |
+
91 92 2 0
|
| 260 |
+
91 99 1 0
|
| 261 |
+
92 93 1 0
|
| 262 |
+
99 94 2 0
|
| 263 |
+
99 98 1 0
|
| 264 |
+
93 94 1 0
|
| 265 |
+
94 95 1 0
|
| 266 |
+
98 97 2 0
|
| 267 |
+
95 96 2 0
|
| 268 |
+
97 96 1 0
|
| 269 |
+
M CHG 4 10 1 19 1 30 1 59 1
|
| 270 |
+
M END
|
| 271 |
+
$$$$
|
5zjz/5zjz_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk5/5zk5_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk5/5zk5_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,246 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
119120 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-24.1268 10.4938 12.5466 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-23.6756 9.0504 12.4668 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-22.2803 8.9421 11.8856 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-21.9645 7.5068 11.4887 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-22.4352 6.9929 10.1170 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-23.5732 5.9826 10.3447 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-21.2784 6.2652 9.6058 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-21.1610 5.5575 8.4686 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-22.0769 5.4469 7.6827 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-19.7997 4.9063 8.1468 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
-19.7820 3.4424 8.5855 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-18.7885 2.5550 7.8269 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-18.6874 1.2029 8.5086 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-19.1657 2.3974 6.3524 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-18.6305 5.6259 8.7085 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
-18.3356 6.8698 8.3459 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
-19.0371 7.5249 7.5671 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
-17.0897 7.4963 8.9883 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
-15.8075 6.9702 8.3321 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
-14.5156 7.7293 8.6828 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
-13.3098 6.9900 8.1254 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
-14.5287 9.1690 8.1793 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
-17.0928 7.2792 10.4384 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
-17.9919 7.8739 11.2280 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
-18.8138 8.6848 10.8038 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
-17.9693 7.5080 12.7222 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
-16.9548 8.3888 13.4479 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
-17.0076 8.2826 14.9727 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
-15.8026 8.9076 15.6770 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
-15.9646 9.1807 16.9647 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 35 |
+
-14.7494 9.1438 15.0776 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 36 |
+
-17.6867 6.0767 12.9488 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 37 |
+
-18.5154 5.1203 12.5223 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 38 |
+
-19.5703 5.3622 11.9787 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 39 |
+
-18.0918 3.6648 12.7191 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 40 |
+
-18.4026 3.1777 14.1511 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 41 |
+
-18.4814 1.6502 14.2947 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 42 |
+
-17.1519 0.9235 14.0690 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 43 |
+
-17.1395 -0.0752 13.3140 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 44 |
+
-16.1198 1.3514 14.6352 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 45 |
+
-16.6823 3.4843 12.4001 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 46 |
+
-16.2105 3.5616 11.1647 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 47 |
+
-16.8857 3.8910 10.2046 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 48 |
+
-14.7500 3.1978 11.0008 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 49 |
+
-14.6398 1.6525 11.0597 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 50 |
+
-15.2142 0.9407 9.8248 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 51 |
+
-15.7846 -0.4632 10.0601 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 52 |
+
-14.7527 -1.4927 10.0145 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 53 |
+
-14.0353 -1.9267 11.0637 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 54 |
+
-13.0964 -2.8557 10.8731 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 55 |
+
-14.2479 -1.4668 12.3070 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 56 |
+
-13.9149 3.8440 12.0328 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 57 |
+
-13.9648 5.1480 12.3322 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 58 |
+
-14.6337 5.9985 11.6986 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 59 |
+
-13.1354 5.5653 13.5430 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 60 |
+
-13.7848 5.0530 14.8363 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 61 |
+
-15.0820 5.6043 15.0084 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 62 |
+
-12.9850 7.0244 13.5700 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 63 |
+
-12.1943 7.6427 12.6966 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 64 |
+
-11.4554 7.0444 11.9066 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 65 |
+
-12.2426 9.1480 12.6668 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 66 |
+
-13.0152 9.5708 11.4157 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 67 |
+
-13.1634 11.0598 11.2137 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 68 |
+
-14.2418 11.7632 11.7481 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 69 |
+
-14.3816 13.1352 11.5416 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 70 |
+
-13.4291 13.8159 10.7917 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 71 |
+
-13.5180 15.1718 10.5781 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 72 |
+
-12.3493 13.1311 10.2616 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 73 |
+
-12.2357 11.7657 10.4605 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 74 |
+
-10.8635 9.6091 12.6006 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 75 |
+
-10.4041 10.5931 13.3563 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 76 |
+
-11.1084 11.2231 14.1275 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 77 |
+
-8.9234 10.9154 13.2041 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 78 |
+
-8.1242 10.1075 14.2347 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 79 |
+
-6.6162 10.1190 13.9919 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 80 |
+
-5.8639 11.0805 14.9025 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 81 |
+
-5.4132 10.4324 16.1388 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 82 |
+
-4.6779 11.0170 17.0895 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 83 |
+
-4.3278 10.3227 18.1703 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 84 |
+
-4.2951 12.2917 16.9809 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 85 |
+
-8.6835 12.3596 13.3590 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 86 |
+
-7.9902 13.0952 12.4878 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 87 |
+
-7.4623 12.6355 11.4726 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 88 |
+
-7.8429 14.5833 12.8259 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 89 |
+
-8.3966 15.4500 11.6756 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 90 |
+
-6.4133 14.9311 13.1267 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 91 |
+
-22.8210 8.0958 9.1152 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 92 |
+
-24.0370 8.2598 8.8763 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 93 |
+
-21.8919 8.7954 8.5539 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 94 |
+
-22.1461 9.8667 7.5850 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 95 |
+
-20.8679 10.6910 7.4076 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 96 |
+
-20.5335 11.5457 8.5988 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 97 |
+
-21.3333 12.6422 8.9334 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 98 |
+
-21.0366 13.4276 10.0400 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 99 |
+
-19.9293 13.1317 10.8246 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 100 |
+
-19.1233 12.0458 10.4985 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 101 |
+
-19.4323 11.2601 9.3930 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 102 |
+
-22.6565 9.3616 6.2466 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 103 |
+
-23.4431 10.0417 5.5989 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 104 |
+
-22.2292 8.1769 5.8234 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 105 |
+
-22.8489 7.5421 4.6553 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 106 |
+
-22.2747 6.1588 4.3755 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 107 |
+
-22.6761 5.5961 3.0122 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 108 |
+
-22.1548 4.1910 2.7855 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 109 |
+
-22.1541 3.7543 1.5254 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 110 |
+
-21.7600 3.5004 3.7298 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 111 |
+
-24.3502 7.4160 4.8612 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 112 |
+
-25.1331 7.8003 3.9942 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 113 |
+
-24.7266 6.8924 6.0269 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 114 |
+
-26.1291 6.7589 6.4210 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 115 |
+
-26.8416 8.1307 6.5733 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 116 |
+
-27.7890 8.3631 5.8459 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 117 |
+
-26.2301 5.9121 7.7078 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 118 |
+
-27.6396 5.6008 8.1722 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 119 |
+
-28.2441 4.4756 7.3589 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 120 |
+
-29.6967 4.4516 7.4371 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 121 |
+
-30.4563 3.4830 6.9348 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 122 |
+
-31.7794 3.5745 7.0549 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 123 |
+
-29.9121 2.4181 6.3246 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 124 |
+
84 86 1 0
|
| 125 |
+
82 84 1 0
|
| 126 |
+
84 85 1 0
|
| 127 |
+
82 83 2 0
|
| 128 |
+
81 82 1 0
|
| 129 |
+
73 81 1 0
|
| 130 |
+
71 73 1 0
|
| 131 |
+
73 74 1 0
|
| 132 |
+
71 72 2 0
|
| 133 |
+
70 71 1 0
|
| 134 |
+
74 75 1 0
|
| 135 |
+
75 76 1 0
|
| 136 |
+
76 77 1 0
|
| 137 |
+
77 78 1 0
|
| 138 |
+
78 80 1 0
|
| 139 |
+
78 79 2 0
|
| 140 |
+
61 70 1 0
|
| 141 |
+
59 61 1 0
|
| 142 |
+
61 62 1 0
|
| 143 |
+
59 60 2 0
|
| 144 |
+
58 59 1 0
|
| 145 |
+
62 63 1 0
|
| 146 |
+
63 64 2 0
|
| 147 |
+
63 69 1 0
|
| 148 |
+
64 65 1 0
|
| 149 |
+
69 68 2 0
|
| 150 |
+
65 66 2 0
|
| 151 |
+
68 66 1 0
|
| 152 |
+
66 67 1 0
|
| 153 |
+
55 58 1 0
|
| 154 |
+
53 55 1 0
|
| 155 |
+
55 56 1 0
|
| 156 |
+
53 54 2 0
|
| 157 |
+
52 53 1 0
|
| 158 |
+
56 57 1 0
|
| 159 |
+
44 52 1 0
|
| 160 |
+
42 44 1 0
|
| 161 |
+
44 45 1 0
|
| 162 |
+
42 43 2 0
|
| 163 |
+
41 42 1 0
|
| 164 |
+
45 46 1 0
|
| 165 |
+
46 47 1 0
|
| 166 |
+
47 48 1 0
|
| 167 |
+
48 49 1 0
|
| 168 |
+
49 50 2 0
|
| 169 |
+
49 51 1 0
|
| 170 |
+
35 41 1 0
|
| 171 |
+
33 35 1 0
|
| 172 |
+
35 36 1 0
|
| 173 |
+
33 34 2 0
|
| 174 |
+
32 33 1 0
|
| 175 |
+
36 37 1 0
|
| 176 |
+
37 38 1 0
|
| 177 |
+
38 40 1 0
|
| 178 |
+
38 39 2 0
|
| 179 |
+
26 32 1 0
|
| 180 |
+
24 26 1 0
|
| 181 |
+
26 27 1 0
|
| 182 |
+
24 25 2 0
|
| 183 |
+
23 24 1 0
|
| 184 |
+
27 28 1 0
|
| 185 |
+
28 29 1 0
|
| 186 |
+
29 31 2 0
|
| 187 |
+
29 30 1 0
|
| 188 |
+
18 23 1 0
|
| 189 |
+
16 18 1 0
|
| 190 |
+
18 19 1 0
|
| 191 |
+
16 17 2 0
|
| 192 |
+
15 16 1 0
|
| 193 |
+
19 20 1 0
|
| 194 |
+
20 21 1 0
|
| 195 |
+
20 22 1 0
|
| 196 |
+
10 15 1 0
|
| 197 |
+
8 10 1 0
|
| 198 |
+
10 11 1 0
|
| 199 |
+
8 9 2 0
|
| 200 |
+
7 8 1 0
|
| 201 |
+
11 12 1 0
|
| 202 |
+
12 13 1 0
|
| 203 |
+
12 14 1 0
|
| 204 |
+
87 88 2 0
|
| 205 |
+
5 87 1 0
|
| 206 |
+
87 89 1 0
|
| 207 |
+
5 7 1 0
|
| 208 |
+
4 5 1 0
|
| 209 |
+
5 6 1 0
|
| 210 |
+
3 4 1 0
|
| 211 |
+
2 1 1 0
|
| 212 |
+
2 3 1 0
|
| 213 |
+
89 90 1 0
|
| 214 |
+
90 98 1 0
|
| 215 |
+
90 91 1 0
|
| 216 |
+
98 99 2 0
|
| 217 |
+
98100 1 0
|
| 218 |
+
91 92 1 0
|
| 219 |
+
92 93 2 0
|
| 220 |
+
92 97 1 0
|
| 221 |
+
93 94 1 0
|
| 222 |
+
97 96 2 0
|
| 223 |
+
94 95 2 0
|
| 224 |
+
96 95 1 0
|
| 225 |
+
100101 1 0
|
| 226 |
+
101107 1 0
|
| 227 |
+
101102 1 0
|
| 228 |
+
107108 2 0
|
| 229 |
+
107109 1 0
|
| 230 |
+
102103 1 0
|
| 231 |
+
103104 1 0
|
| 232 |
+
104106 2 0
|
| 233 |
+
104105 1 0
|
| 234 |
+
109110 1 0
|
| 235 |
+
110111 1 0
|
| 236 |
+
110113 1 0
|
| 237 |
+
111112 2 0
|
| 238 |
+
113114 1 0
|
| 239 |
+
114115 1 0
|
| 240 |
+
115116 1 0
|
| 241 |
+
116117 1 0
|
| 242 |
+
117118 2 0
|
| 243 |
+
117119 1 0
|
| 244 |
+
M CHG 1 86 1
|
| 245 |
+
M END
|
| 246 |
+
$$$$
|
5zk5/5zk5_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk7/5zk7_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk7/5zk7_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
43 43 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-7.6688 10.0279 16.9227 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-7.1264 10.0024 15.4903 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-6.1471 9.2816 15.2419 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-7.6925 10.7657 14.5120 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-8.8660 11.6914 14.6269 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-8.9038 12.6720 13.4467 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-10.0359 13.6894 13.5209 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-9.9072 14.7606 12.4546 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-8.8741 15.7430 12.7762 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-8.5469 16.7855 12.0106 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
-7.5829 17.6099 12.4070 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-9.1709 17.0091 10.8500 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-10.1750 10.9072 14.7180 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-10.9381 11.0936 15.6669 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-10.4225 10.0395 13.7339 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
-11.6196 9.1821 13.7261 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
-12.4935 9.4297 12.4904 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
-12.8239 10.8832 12.2666 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
-13.7273 11.5568 13.0930 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
-14.0214 12.9075 12.8877 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
-13.4024 13.5900 11.8548 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
-13.6692 14.9225 11.6381 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
-12.5055 12.9392 11.0297 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
-12.2208 11.5972 11.2377 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
-11.2441 7.7057 13.7730 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
-10.3358 7.2677 13.0645 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
-11.9553 6.9541 14.6057 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
-11.9380 5.5025 14.5443 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
-12.6001 4.9113 15.7919 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
-13.9840 5.2424 15.8518 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 35 |
+
-12.6942 5.0410 13.2989 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 36 |
+
-13.4470 5.8228 12.6852 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 37 |
+
-12.5103 3.7687 12.9437 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 38 |
+
-13.2738 3.1481 11.8625 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 39 |
+
-14.7823 3.3108 12.0911 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 40 |
+
-15.4937 3.6970 11.1521 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 41 |
+
-12.9223 1.6570 11.7104 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 42 |
+
-13.6503 0.9844 10.5548 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 43 |
+
-13.4369 -0.5199 10.4701 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 44 |
+
-14.0250 -0.9848 9.2174 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 45 |
+
-15.3211 -1.2342 9.0184 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 46 |
+
-16.2140 -1.1190 9.9946 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 47 |
+
-15.7333 -1.6210 7.8164 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 48 |
+
2 3 2 0
|
| 49 |
+
2 1 1 0
|
| 50 |
+
2 4 1 0
|
| 51 |
+
4 5 1 0
|
| 52 |
+
5 13 1 0
|
| 53 |
+
5 6 1 0
|
| 54 |
+
13 14 2 0
|
| 55 |
+
13 15 1 0
|
| 56 |
+
6 7 1 0
|
| 57 |
+
7 8 1 0
|
| 58 |
+
8 9 1 0
|
| 59 |
+
9 10 1 0
|
| 60 |
+
10 12 1 0
|
| 61 |
+
10 11 2 0
|
| 62 |
+
15 16 1 0
|
| 63 |
+
16 25 1 0
|
| 64 |
+
16 17 1 0
|
| 65 |
+
25 26 2 0
|
| 66 |
+
25 27 1 0
|
| 67 |
+
17 18 1 0
|
| 68 |
+
18 19 2 0
|
| 69 |
+
18 24 1 0
|
| 70 |
+
19 20 1 0
|
| 71 |
+
24 23 2 0
|
| 72 |
+
20 21 2 0
|
| 73 |
+
23 21 1 0
|
| 74 |
+
21 22 1 0
|
| 75 |
+
27 28 1 0
|
| 76 |
+
28 31 1 0
|
| 77 |
+
28 29 1 0
|
| 78 |
+
31 32 2 0
|
| 79 |
+
31 33 1 0
|
| 80 |
+
29 30 1 0
|
| 81 |
+
33 34 1 0
|
| 82 |
+
34 35 1 0
|
| 83 |
+
34 37 1 0
|
| 84 |
+
35 36 2 0
|
| 85 |
+
37 38 1 0
|
| 86 |
+
38 39 1 0
|
| 87 |
+
39 40 1 0
|
| 88 |
+
40 41 1 0
|
| 89 |
+
41 43 1 0
|
| 90 |
+
41 42 2 0
|
| 91 |
+
M END
|
| 92 |
+
$$$$
|
5zk7/5zk7_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk9/5zk9_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zk9/5zk9_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,248 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 202 |
+
111113 2 0
|
| 203 |
+
111112 1 0
|
| 204 |
+
100105 1 0
|
| 205 |
+
98100 1 0
|
| 206 |
+
100101 1 0
|
| 207 |
+
98 99 2 0
|
| 208 |
+
97 98 1 0
|
| 209 |
+
101102 1 0
|
| 210 |
+
102103 1 0
|
| 211 |
+
102104 1 0
|
| 212 |
+
92 97 1 0
|
| 213 |
+
90 92 1 0
|
| 214 |
+
92 93 1 0
|
| 215 |
+
90 91 2 0
|
| 216 |
+
89 90 1 0
|
| 217 |
+
93 94 1 0
|
| 218 |
+
94 95 1 0
|
| 219 |
+
94 96 1 0
|
| 220 |
+
69 70 2 0
|
| 221 |
+
67 69 1 0
|
| 222 |
+
69 71 1 0
|
| 223 |
+
89 67 1 0
|
| 224 |
+
67 66 1 0
|
| 225 |
+
67 68 1 0
|
| 226 |
+
66 65 1 0
|
| 227 |
+
63 64 1 0
|
| 228 |
+
64 65 1 0
|
| 229 |
+
71 72 1 0
|
| 230 |
+
72 77 1 0
|
| 231 |
+
72 73 1 0
|
| 232 |
+
77 78 2 0
|
| 233 |
+
77 79 1 0
|
| 234 |
+
73 74 1 0
|
| 235 |
+
74 75 1 0
|
| 236 |
+
74 76 1 0
|
| 237 |
+
79 80 1 0
|
| 238 |
+
80 86 1 0
|
| 239 |
+
80 81 1 0
|
| 240 |
+
86 88 2 0
|
| 241 |
+
86 87 1 0
|
| 242 |
+
81 82 1 0
|
| 243 |
+
82 83 1 0
|
| 244 |
+
83 84 1 0
|
| 245 |
+
84 85 1 0
|
| 246 |
+
M CHG 1 85 1
|
| 247 |
+
M END
|
| 248 |
+
$$$$
|
5zk9/5zk9_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zlf/5zlf_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zlf/5zlf_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
30 33 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-9.2100 7.8691 2.6277 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-10.4213 6.9862 2.8082 P 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-11.6619 7.8458 2.8642 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-10.2924 6.2186 4.1032 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-10.5556 5.7866 1.3879 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-9.4963 4.8734 1.4769 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-10.4526 6.5755 0.0759 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-10.7015 5.7715 -1.2074 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-10.0459 4.5767 -1.4681 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-10.2982 3.8863 -2.6465 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
-11.1990 4.3851 -3.5781 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-11.8502 5.5814 -3.3241 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-12.7579 6.1468 -4.2119 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-13.8456 6.7944 -3.6463 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-14.7962 7.4122 -4.4457 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
-14.6478 7.3894 -5.8218 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
-13.5498 6.7459 -6.4069 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
-12.6066 6.1329 -5.6153 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
-11.6479 5.5882 -6.4607 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
-12.0070 5.8712 -7.7736 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
-11.4080 5.5651 -9.0068 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
-11.9998 5.9807 -10.1915 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
-13.1860 6.7034 -10.1608 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
-13.7781 7.0039 -8.9432 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
-13.1791 6.5827 -7.7449 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
-11.5928 6.2649 -2.1451 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
-12.1798 4.8888 1.5673 P 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
-13.3188 5.8763 1.4840 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
-12.3400 3.8395 0.4936 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
-12.2107 4.2130 2.9188 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 35 |
+
25 24 2 0
|
| 36 |
+
25 20 1 0
|
| 37 |
+
25 17 1 0
|
| 38 |
+
24 23 1 0
|
| 39 |
+
23 22 2 0
|
| 40 |
+
22 21 1 0
|
| 41 |
+
21 20 2 0
|
| 42 |
+
20 19 1 0
|
| 43 |
+
19 18 1 0
|
| 44 |
+
18 17 1 0
|
| 45 |
+
18 13 2 0
|
| 46 |
+
17 16 2 0
|
| 47 |
+
16 15 1 0
|
| 48 |
+
15 14 2 0
|
| 49 |
+
14 13 1 0
|
| 50 |
+
13 12 1 0
|
| 51 |
+
12 26 1 0
|
| 52 |
+
12 11 2 0
|
| 53 |
+
26 8 2 0
|
| 54 |
+
11 10 1 0
|
| 55 |
+
10 9 2 0
|
| 56 |
+
9 8 1 0
|
| 57 |
+
8 7 1 0
|
| 58 |
+
7 5 1 0
|
| 59 |
+
5 2 1 0
|
| 60 |
+
5 27 1 0
|
| 61 |
+
5 6 1 0
|
| 62 |
+
2 3 1 0
|
| 63 |
+
2 1 2 0
|
| 64 |
+
2 4 1 0
|
| 65 |
+
27 28 2 0
|
| 66 |
+
27 29 1 0
|
| 67 |
+
27 30 1 0
|
| 68 |
+
M END
|
| 69 |
+
$$$$
|
5zlf/5zlf_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zml/5zml_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zml/5zml_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,273 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
132134 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-5.3416 18.4692 16.9182 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-5.8450 17.4653 15.8995 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-6.9951 17.5049 15.4959 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-4.9335 16.5746 15.4850 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-5.1183 15.5578 14.4419 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-3.9814 14.5290 14.5077 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-2.6881 15.0104 13.8752 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-1.5050 14.1377 14.2744 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-0.5224 13.9530 13.1237 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-0.0460 15.2387 12.5466 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
-6.4676 14.8213 14.4457 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-7.0085 14.5146 15.5039 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-6.9778 14.5154 13.2487 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-8.2780 13.8710 13.0832 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-9.0863 14.5809 11.9924 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
-9.5317 16.0013 12.3314 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
-10.2302 16.1456 13.6935 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
-11.3654 15.1505 13.9401 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
-11.8617 15.1984 15.3467 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
-8.1231 12.4003 12.7215 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
-7.6289 12.0741 11.6459 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
-8.5263 11.5299 13.6389 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
-8.5711 10.0960 13.4048 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
-7.6688 9.3404 14.3929 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
-6.1807 9.6476 14.2261 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
-5.3640 9.3845 15.4927 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
-5.2497 7.9529 15.7834 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
-4.8806 7.4156 16.9522 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
-4.5806 8.1789 18.0063 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
-4.8276 6.0837 17.0684 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 35 |
+
-10.0141 9.6363 13.5441 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 36 |
+
-10.7215 10.0136 14.4898 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 37 |
+
-10.4531 8.8226 12.5992 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 38 |
+
-11.7549 8.2052 12.6736 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 39 |
+
-12.6200 8.6458 11.4997 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 40 |
+
-12.9025 10.1143 11.4960 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 41 |
+
-13.9422 10.6492 12.2592 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 42 |
+
-14.1866 12.0034 12.2620 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 43 |
+
-13.4310 12.8238 11.4855 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 44 |
+
-13.6710 14.1398 11.4456 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 45 |
+
-12.3980 12.3277 10.7083 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 46 |
+
-12.1407 10.9845 10.7285 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 47 |
+
-11.5962 6.7247 12.6531 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 48 |
+
-10.8462 6.1749 11.8452 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 49 |
+
-12.3370 6.0675 13.5318 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 50 |
+
-12.4371 4.6464 13.4959 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 51 |
+
-13.1079 4.1008 14.7726 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 52 |
+
-14.4501 4.5553 14.8619 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 53 |
+
-13.2587 4.2762 12.3114 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 54 |
+
-14.0574 5.0850 11.7934 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 55 |
+
-13.0898 3.0393 11.9151 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 56 |
+
-13.9054 2.4567 10.9051 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 57 |
+
-13.6057 0.9828 10.8545 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 58 |
+
-14.4083 0.2575 9.8379 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 59 |
+
-14.1541 -1.2166 9.8859 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 60 |
+
-14.9612 -1.8213 8.8517 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 61 |
+
-16.2245 -2.2094 8.9988 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 62 |
+
-16.8537 -2.7479 7.9553 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 63 |
+
-16.8727 -2.0601 10.1631 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 64 |
+
-15.3995 2.6648 11.2146 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 65 |
+
-16.1585 3.1141 10.3613 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 66 |
+
-15.7880 2.3349 12.4615 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 67 |
+
-17.1726 2.4627 12.9300 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 68 |
+
-17.9845 1.4185 12.1618 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 69 |
+
-17.2204 2.1357 14.4360 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 70 |
+
-18.6069 2.2434 15.0966 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 71 |
+
-18.9115 3.6251 15.6502 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 72 |
+
-20.3399 3.6376 16.1681 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 73 |
+
-21.3058 4.4885 15.7875 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 74 |
+
-21.2053 5.6006 14.7718 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 75 |
+
-21.7433 5.1304 13.4339 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 76 |
+
-21.6639 6.2721 12.4339 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 77 |
+
-21.9701 5.8984 10.9912 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 78 |
+
-23.2255 5.0246 10.9313 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 79 |
+
-22.2044 7.2376 10.2762 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 80 |
+
-23.3676 7.6058 10.0985 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 81 |
+
-21.1902 7.9328 9.8777 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 82 |
+
-21.3393 9.2199 9.1884 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 83 |
+
-20.0057 9.9809 9.2122 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 84 |
+
-19.6751 10.6268 10.5301 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 85 |
+
-20.6598 11.1622 11.3596 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 86 |
+
-20.3310 11.7454 12.5595 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 87 |
+
-19.0028 11.8427 12.9422 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 88 |
+
-18.0138 11.3488 12.1187 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 89 |
+
-18.3484 10.7587 10.9153 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 90 |
+
-21.8200 9.1343 7.7377 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 91 |
+
-22.0460 10.1728 7.1027 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 92 |
+
-21.9648 7.9272 7.2127 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 93 |
+
-22.5996 7.7240 5.9181 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 94 |
+
-22.3282 6.2916 5.4505 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 95 |
+
-22.5669 6.0497 3.9769 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 96 |
+
-22.2032 4.6247 3.5936 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 97 |
+
-22.2723 4.4358 2.1511 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 98 |
+
-22.0254 3.2929 1.5154 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 99 |
+
-22.0728 3.2600 0.1930 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 100 |
+
-21.6971 2.1849 2.1872 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 101 |
+
-24.1154 7.9955 5.9713 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 102 |
+
-24.6886 8.5271 5.0274 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 103 |
+
-24.7498 7.6298 7.0864 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 104 |
+
-26.2154 7.6306 7.2199 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 105 |
+
-26.5929 7.1618 8.6292 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 106 |
+
-26.8520 8.9911 6.9437 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 107 |
+
-27.8651 9.0749 6.2516 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 108 |
+
-26.3572 10.0159 7.4109 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 109 |
+
-20.8856 5.1378 10.3744 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 110 |
+
-20.8580 4.8120 9.0635 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 111 |
+
-21.7420 5.1683 8.2736 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 112 |
+
-19.6349 4.0567 8.5200 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 113 |
+
-19.6852 2.5505 8.7812 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 114 |
+
-18.6432 1.6651 8.0773 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 115 |
+
-18.8969 0.2001 8.4085 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 116 |
+
-18.6283 1.8396 6.5627 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 117 |
+
-18.4053 4.6552 9.0047 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 118 |
+
-18.0835 5.8969 8.6657 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 119 |
+
-18.7814 6.5956 7.9152 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 120 |
+
-16.8015 6.4623 9.2343 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 121 |
+
-15.5667 6.0203 8.4210 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 122 |
+
-14.2817 6.7671 8.8223 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 123 |
+
-13.0560 6.1274 8.1789 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 124 |
+
-14.3123 8.2591 8.4765 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 125 |
+
-16.6673 6.1430 10.6567 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 126 |
+
-17.5490 6.6390 11.5311 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 127 |
+
-18.4878 7.3848 11.2023 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 128 |
+
-17.3279 6.2670 12.9868 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 129 |
+
-16.2378 7.2166 13.5158 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 130 |
+
-15.8941 7.1425 14.9828 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 131 |
+
-14.8781 8.2069 15.3790 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 132 |
+
-15.3736 9.4007 15.6840 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 133 |
+
-13.6518 7.9548 15.4171 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 134 |
+
-16.9548 4.8572 13.1141 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 135 |
+
-17.6899 3.8641 12.7082 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 136 |
+
-18.7826 3.9600 12.1289 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 137 |
+
2 3 2 0
|
| 138 |
+
2 1 1 0
|
| 139 |
+
4 2 1 0
|
| 140 |
+
5 4 1 0
|
| 141 |
+
11 5 1 0
|
| 142 |
+
5 6 1 0
|
| 143 |
+
11 12 2 0
|
| 144 |
+
13 11 1 0
|
| 145 |
+
6 7 1 0
|
| 146 |
+
7 8 1 0
|
| 147 |
+
8 9 1 0
|
| 148 |
+
9 10 1 0
|
| 149 |
+
14 13 1 0
|
| 150 |
+
20 14 1 0
|
| 151 |
+
14 15 1 0
|
| 152 |
+
20 21 2 0
|
| 153 |
+
22 20 1 0
|
| 154 |
+
15 16 1 0
|
| 155 |
+
16 17 1 0
|
| 156 |
+
17 18 1 0
|
| 157 |
+
18 19 1 0
|
| 158 |
+
23 22 1 0
|
| 159 |
+
31 23 1 0
|
| 160 |
+
23 24 1 0
|
| 161 |
+
31 32 2 0
|
| 162 |
+
33 31 1 0
|
| 163 |
+
24 25 1 0
|
| 164 |
+
25 26 1 0
|
| 165 |
+
26 27 1 0
|
| 166 |
+
27 28 1 0
|
| 167 |
+
28 29 2 0
|
| 168 |
+
28 30 1 0
|
| 169 |
+
34 33 1 0
|
| 170 |
+
43 34 1 0
|
| 171 |
+
34 35 1 0
|
| 172 |
+
43 44 2 0
|
| 173 |
+
45 43 1 0
|
| 174 |
+
35 36 1 0
|
| 175 |
+
36 37 2 0
|
| 176 |
+
36 42 1 0
|
| 177 |
+
37 38 1 0
|
| 178 |
+
42 41 2 0
|
| 179 |
+
38 39 2 0
|
| 180 |
+
41 39 1 0
|
| 181 |
+
39 40 1 0
|
| 182 |
+
46 45 1 0
|
| 183 |
+
49 46 1 0
|
| 184 |
+
46 47 1 0
|
| 185 |
+
49 50 2 0
|
| 186 |
+
51 49 1 0
|
| 187 |
+
47 48 1 0
|
| 188 |
+
52 51 1 0
|
| 189 |
+
60 52 1 0
|
| 190 |
+
52 53 1 0
|
| 191 |
+
60 61 2 0
|
| 192 |
+
62 60 1 0
|
| 193 |
+
53 54 1 0
|
| 194 |
+
54 55 1 0
|
| 195 |
+
55 56 1 0
|
| 196 |
+
56 57 1 0
|
| 197 |
+
57 59 1 0
|
| 198 |
+
57 58 2 0
|
| 199 |
+
131132 2 0
|
| 200 |
+
131 63 1 0
|
| 201 |
+
130131 1 0
|
| 202 |
+
63 62 1 0
|
| 203 |
+
63 65 1 0
|
| 204 |
+
63 64 1 0
|
| 205 |
+
65 66 1 0
|
| 206 |
+
67 68 1 0
|
| 207 |
+
66 67 1 0
|
| 208 |
+
68 69 2 0
|
| 209 |
+
124130 1 0
|
| 210 |
+
122124 1 0
|
| 211 |
+
124125 1 0
|
| 212 |
+
122123 2 0
|
| 213 |
+
121122 1 0
|
| 214 |
+
125126 1 0
|
| 215 |
+
126127 1 0
|
| 216 |
+
127129 2 0
|
| 217 |
+
127128 1 0
|
| 218 |
+
116121 1 0
|
| 219 |
+
114116 1 0
|
| 220 |
+
116117 1 0
|
| 221 |
+
114115 2 0
|
| 222 |
+
113114 1 0
|
| 223 |
+
117118 1 0
|
| 224 |
+
118119 1 0
|
| 225 |
+
118120 1 0
|
| 226 |
+
108113 1 0
|
| 227 |
+
106108 1 0
|
| 228 |
+
108109 1 0
|
| 229 |
+
106107 2 0
|
| 230 |
+
105106 1 0
|
| 231 |
+
109110 1 0
|
| 232 |
+
110111 1 0
|
| 233 |
+
110112 1 0
|
| 234 |
+
75 76 2 0
|
| 235 |
+
73 75 1 0
|
| 236 |
+
75 77 1 0
|
| 237 |
+
105 73 1 0
|
| 238 |
+
73 72 1 0
|
| 239 |
+
73 74 1 0
|
| 240 |
+
72 71 1 0
|
| 241 |
+
69 70 1 0
|
| 242 |
+
70 71 1 0
|
| 243 |
+
77 78 1 0
|
| 244 |
+
78 86 1 0
|
| 245 |
+
78 79 1 0
|
| 246 |
+
86 87 2 0
|
| 247 |
+
86 88 1 0
|
| 248 |
+
79 80 1 0
|
| 249 |
+
80 81 2 0
|
| 250 |
+
80 85 1 0
|
| 251 |
+
81 82 1 0
|
| 252 |
+
85 84 2 0
|
| 253 |
+
82 83 2 0
|
| 254 |
+
84 83 1 0
|
| 255 |
+
88 89 1 0
|
| 256 |
+
89 97 1 0
|
| 257 |
+
89 90 1 0
|
| 258 |
+
97 98 2 0
|
| 259 |
+
97 99 1 0
|
| 260 |
+
90 91 1 0
|
| 261 |
+
91 92 1 0
|
| 262 |
+
92 93 1 0
|
| 263 |
+
93 94 1 0
|
| 264 |
+
94 96 1 0
|
| 265 |
+
94 95 2 0
|
| 266 |
+
99100 1 0
|
| 267 |
+
100102 1 0
|
| 268 |
+
100101 1 0
|
| 269 |
+
102104 1 0
|
| 270 |
+
102103 2 0
|
| 271 |
+
M CHG 2 10 1 19 1
|
| 272 |
+
M END
|
| 273 |
+
$$$$
|
5zml/5zml_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zr3/5zr3_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zr3/5zr3_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,76 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
33 37 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
17.1120 11.3105 -33.7112 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
18.2716 11.1625 -32.7590 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
18.7512 9.8717 -32.5480 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
19.8013 9.6275 -31.6594 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
20.4385 8.2766 -31.4336 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
20.3544 7.4016 -32.4245 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
21.1327 8.0049 -30.4464 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
20.3705 10.7113 -31.0153 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
19.8927 12.0192 -31.2062 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
18.8241 12.3359 -32.0284 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
18.4279 13.5514 -32.3513 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
17.1400 14.0580 -32.3752 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
17.2177 15.2892 -32.9389 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
16.1551 16.2717 -33.2190 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
14.9817 15.4695 -33.8320 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
15.7614 17.1075 -32.0155 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
18.6152 15.5312 -33.4035 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
19.3869 16.5822 -34.1292 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
18.8217 17.7611 -34.5549 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
18.3607 18.6638 -33.6778 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
17.8902 19.7081 -34.3932 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
18.0898 19.4172 -35.6619 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
17.6932 20.4620 -36.6611 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
16.8437 21.5435 -36.3776 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
16.7590 22.3046 -37.5077 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
17.5736 21.6325 -38.4424 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 31 |
+
17.6405 22.2612 -39.7743 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 32 |
+
18.1718 20.5294 -37.9421 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 33 |
+
18.7308 18.1828 -35.8282 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 34 |
+
20.7421 16.2329 -34.2706 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 35 |
+
21.3367 15.0392 -33.8400 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 36 |
+
20.6462 14.1018 -33.2282 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 37 |
+
19.3233 14.2944 -32.9853 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 38 |
+
7 5 2 0
|
| 39 |
+
5 6 1 0
|
| 40 |
+
5 4 1 0
|
| 41 |
+
4 3 1 0
|
| 42 |
+
4 8 2 0
|
| 43 |
+
3 2 2 0
|
| 44 |
+
2 1 1 0
|
| 45 |
+
2 10 1 0
|
| 46 |
+
8 9 1 0
|
| 47 |
+
9 10 2 0
|
| 48 |
+
10 11 1 0
|
| 49 |
+
11 12 1 0
|
| 50 |
+
11 33 1 0
|
| 51 |
+
12 13 2 0
|
| 52 |
+
13 14 1 0
|
| 53 |
+
13 17 1 0
|
| 54 |
+
14 15 1 0
|
| 55 |
+
14 16 1 0
|
| 56 |
+
17 33 2 0
|
| 57 |
+
17 18 1 0
|
| 58 |
+
33 32 1 0
|
| 59 |
+
32 31 2 0
|
| 60 |
+
31 30 1 0
|
| 61 |
+
30 18 2 0
|
| 62 |
+
18 19 1 0
|
| 63 |
+
19 20 1 0
|
| 64 |
+
19 29 1 0
|
| 65 |
+
20 21 2 0
|
| 66 |
+
21 22 1 0
|
| 67 |
+
29 22 2 0
|
| 68 |
+
22 23 1 0
|
| 69 |
+
23 24 1 0
|
| 70 |
+
23 28 2 0
|
| 71 |
+
24 25 2 0
|
| 72 |
+
25 26 1 0
|
| 73 |
+
28 26 1 0
|
| 74 |
+
26 27 1 0
|
| 75 |
+
M END
|
| 76 |
+
$$$$
|
5zr3/5zr3_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zxk/5zxk_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
5zxk/5zxk_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
15 14 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-51.2321 -30.8729 58.4208 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
-51.9817 -29.6910 57.9114 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
-52.2243 -28.5878 58.6218 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
-51.7116 -28.2346 59.9757 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
-50.6085 -27.2997 59.8939 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
-49.7637 -27.0072 61.2286 P 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
-49.3683 -28.2719 61.9200 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
-48.7033 -26.0609 60.7565 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
-50.8826 -26.2781 62.1455 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
-51.9082 -24.9915 62.0583 P 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
-51.6475 -24.4421 60.6600 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
-51.4809 -24.1021 63.2312 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
-53.3665 -25.4668 62.2268 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
-52.5045 -29.7766 56.4396 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
-52.8697 -28.5005 55.9143 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
6 8 1 0
|
| 21 |
+
6 7 2 0
|
| 22 |
+
6 9 1 0
|
| 23 |
+
5 6 1 0
|
| 24 |
+
9 10 1 0
|
| 25 |
+
10 12 1 0
|
| 26 |
+
10 11 2 0
|
| 27 |
+
10 13 1 0
|
| 28 |
+
2 1 1 0
|
| 29 |
+
4 3 1 0
|
| 30 |
+
3 2 2 0
|
| 31 |
+
4 5 1 0
|
| 32 |
+
2 14 1 0
|
| 33 |
+
14 15 1 0
|
| 34 |
+
M END
|
| 35 |
+
$$$$
|
5zxk/5zxk_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
6a1c/6a1c_af2_apo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
6a1c/6a1c_af2_holo_ligand.sdf
ADDED
|
@@ -0,0 +1,58 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
RDKit 3D
|
| 3 |
+
|
| 4 |
+
25 27 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
6.5919 6.3457 -5.4775 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 6 |
+
5.8548 6.1270 -6.6815 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 7 |
+
5.4764 7.1662 -7.5054 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 8 |
+
5.7088 8.4838 -7.1285 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 9 |
+
5.3423 9.5280 -7.9688 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 10 |
+
5.6153 10.9010 -7.4822 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 11 |
+
5.7741 11.1155 -6.2474 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 12 |
+
5.7970 12.3424 -5.6925 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 13 |
+
5.3691 13.4605 -6.3148 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 14 |
+
4.7075 13.5459 -7.9363 S 0 0 0 0 0 0 0 0 0 0 0 0
|
| 15 |
+
4.8295 15.2265 -8.5207 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 16 |
+
5.4976 14.5613 -5.5476 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 17 |
+
6.0614 14.0540 -4.3458 N 0 0 0 0 0 0 0 0 0 0 0 0
|
| 18 |
+
6.2550 12.6826 -4.4331 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 19 |
+
6.8894 11.8764 -3.3115 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 20 |
+
7.3600 10.5502 -3.4731 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 21 |
+
7.9715 9.8280 -2.4148 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 22 |
+
8.1343 10.4612 -1.1882 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 23 |
+
7.6998 11.7769 -1.0148 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 24 |
+
7.1015 12.4910 -2.0672 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 25 |
+
4.7706 9.1825 -9.2087 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 26 |
+
4.2717 10.4516 -10.4032 Br 0 0 0 0 0 0 0 0 0 0 0 0
|
| 27 |
+
4.5415 7.9094 -9.6463 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 28 |
+
4.8906 6.9140 -8.7550 C 0 0 0 0 0 0 0 0 0 0 0 0
|
| 29 |
+
4.6351 5.7300 -9.1507 O 0 0 0 0 0 0 0 0 0 0 0 0
|
| 30 |
+
23 24 1 0
|
| 31 |
+
3 24 1 0
|
| 32 |
+
24 25 2 0
|
| 33 |
+
21 23 2 0
|
| 34 |
+
5 21 1 0
|
| 35 |
+
21 22 1 0
|
| 36 |
+
5 4 2 0
|
| 37 |
+
6 5 1 0
|
| 38 |
+
4 3 1 0
|
| 39 |
+
3 2 1 0
|
| 40 |
+
2 1 1 0
|
| 41 |
+
7 6 2 0
|
| 42 |
+
8 9 1 0
|
| 43 |
+
9 12 2 0
|
| 44 |
+
9 10 1 0
|
| 45 |
+
7 8 1 0
|
| 46 |
+
8 14 1 0
|
| 47 |
+
14 13 2 0
|
| 48 |
+
14 15 1 0
|
| 49 |
+
13 12 1 0
|
| 50 |
+
10 11 1 0
|
| 51 |
+
15 16 2 0
|
| 52 |
+
15 20 1 0
|
| 53 |
+
16 17 1 0
|
| 54 |
+
17 18 2 0
|
| 55 |
+
18 19 1 0
|
| 56 |
+
19 20 2 0
|
| 57 |
+
M END
|
| 58 |
+
$$$$
|
6a1c/6a1c_af2_holo_protein.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|